IL_6WQQ_081

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

6WQQ|1|1|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_081 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1435

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6WQQ|1|1|A|2486
6WQQ|1|1|U|2487
6WQQ|1|1|C|2488
*
6WQQ|1|1|G|2516
6WQQ|1|1|G|2517
6WQQ|1|1|U|2518
6WQQ|1|1|U|2519
6WQQ|1|1|U|2520

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L16