IL_6WQQ_089

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_089 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.1363

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6WQQ|1|1|C|2707
6WQQ|1|1|C|2708
6WQQ|1|1|U|2709
6WQQ|1|1|C|2710
6WQQ|1|1|U|2711
*
6WQQ|1|1|A|2752
6WQQ|1|1|U|2753
6WQQ|1|1|G|2754

Current chains

Chain 1

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L19

Chain L

50S ribosomal protein L3

Chain W

50S ribosomal protein L14