IL_6WQQ_095

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_095 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1555

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|U|2867
6WQQ|1|1|G|2868
6WQQ|1|1|G|2869
6WQQ|1|1|A|2870
6WQQ|1|1|A|2871
6WQQ|1|1|G|2872
*
6WQQ|1|1|U|2885
6WQQ|1|1|G|2886
6WQQ|1|1|G|2887
6WQQ|1|1|A|2888
6WQQ|1|1|G|2889

Current chains

Chain 1

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L19

Chain Z

50S ribosomal protein L17