IL_6WQQ_096

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_096 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3558

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WQQ|1|2|C|2
6WQQ|1|2|U|3
6WQQ|1|2|G|4
*
6WQQ|1|2|C|109
6WQQ|1|2|C|110
6WQQ|1|2|A|111
6WQQ|1|2|G|112

Current chains

Chain 2

5S rRNA

Nearby chains

Chain a

50S ribosomal protein L18