IL_6WQQ_109

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_109 not in the Motif Atlas

Homologous match to IL_4WF9_073

Geometric discrepancy: 0.1561

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WQQ|1|1|U|1878
6WQQ|1|1|U|1879
6WQQ|1|1|A|1880
6WQQ|1|1|A|1881
6WQQ|1|1|G|1882
*
6WQQ|1|1|C|1914
6WQQ|1|1|G|1915
6WQQ|1|1|A|1916
6WQQ|1|1|A|1917
6WQQ|1|1|G|1918

Current chains

Chain 1

23S rRNA

Nearby chains