IL_6WQQ_110

3D structure

PDB id

6WQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WQQ_110 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1585

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6WQQ|1|1|U|1891
6WQQ|1|1|U|1892
6WQQ|1|1|A|1893
6WQQ|1|1|G|1894
*
6WQQ|1|1|C|1901
6WQQ|1|1|G|1902
6WQQ|1|1|A|1903
6WQQ|1|1|A|1904
6WQQ|1|1|G|1905

Current chains

Chain 1

23S rRNA

Nearby chains