IL_6WRS_117

3D structure

PDB id

6WRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S subunit of the ribosome from Methicillin Resistant Staphylococcus aureus in complex with the antibiotic, tedizolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WRS_117 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.4881

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WRS|1|1|G|1518
6WRS|1|1|U|1519
6WRS|1|1|A|1520
6WRS|1|1|A|1521
6WRS|1|1|G|1522
*
6WRS|1|1|U|1558
6WRS|1|1|G|1559
6WRS|1|1|A|1560
6WRS|1|1|G|1561
6WRS|1|1|C|1562

Current chains

Chain 1

23S rRNA

Nearby chains