IL_6WYV_016

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WYV|1|I|G|801, 6WYV|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_016 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WYV|1|I|G|674
6WYV|1|I|A|675
6WYV|1|I|A|676
6WYV|1|I|A|677
6WYV|1|I|C|678
*
6WYV|1|I|G|799
6WYV|1|I|A|800
6WYV|1|I|G|801
6WYV|1|I|A|802
6WYV|1|I|U|803
6WYV|1|I|A|804
6WYV|1|I|G|805
6WYV|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4