IL_6WYV_031

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

6WYV|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_031 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.1864

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WYV|1|I|G|997
6WYV|1|I|C|998
6WYV|1|I|U|999
6WYV|1|I|A|1000
6WYV|1|I|A|1001
6WYV|1|I|G|1002
*
6WYV|1|I|C|1153
6WYV|1|I|G|1154
6WYV|1|I|A|1155
6WYV|1|I|A|1156
6WYV|1|I|G|1157
6WYV|1|I|C|1158

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA