IL_6WYV_042

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6WYV|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_042 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1247

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6WYV|1|I|C|1208
6WYV|1|I|U|1209
6WYV|1|I|G|1210
6WYV|1|I|C|1211
6WYV|1|I|G|1212
6WYV|1|I|A|1213
6WYV|1|I|A|1214
6WYV|1|I|G|1215
*
6WYV|1|I|U|1234
6WYV|1|I|G|1235
6WYV|1|I|G|1236
6WYV|1|I|A|1237
6WYV|1|I|G|1238

Current chains

Chain I

23S ribosomal RNA

Nearby chains