IL_6WYV_106

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

6WYV|1|J|C|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_106 not in the Motif Atlas

Homologous match to IL_5J7L_358

Geometric discrepancy: 0.2712

The information below is about IL_5J7L_358

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

6WYV|1|J|A|34
6WYV|1|J|C|35
6WYV|1|J|C|36
6WYV|1|J|C|37
6WYV|1|J|C|38
*
6WYV|1|J|G|44
6WYV|1|J|A|45
6WYV|1|J|A|46
6WYV|1|J|C|47
6WYV|1|J|U|48

Current chains

Chain J

5S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA