IL_6WYV_112

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WYV_112 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0892

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6WYV|1|I|U|1851
6WYV|1|I|U|1852
6WYV|1|I|A|1853
6WYV|1|I|A|1854
6WYV|1|I|U|1855
6WYV|1|I|U|1856
6WYV|1|I|G|1857
6WYV|1|I|A|1858
6WYV|1|I|U|1859
6WYV|1|I|G|1860
*
6WYV|1|I|U|1882
6WYV|1|I|U|1883
6WYV|1|I|G|1884
6WYV|1|I|A|1885
6WYV|1|I|U|1886
6WYV|1|I|C|1887
6WYV|1|I|G|1888
6WYV|1|I|A|1889
6WYV|1|I|A|1890
6WYV|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains