3D structure

PDB id
6X7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 24 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCCAGACAGCC*GGUCGAG
Length
18 nucleotides
Bulged bases
6X7K|1|a|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6X7K|1|a|C|1043
6X7K|1|a|C|1044
6X7K|1|a|C|1045
6X7K|1|a|A|1046
6X7K|1|a|G|1047
6X7K|1|a|A|1048
6X7K|1|a|C|1049
6X7K|1|a|A|1050
6X7K|1|a|G|1051
6X7K|1|a|C|1052
6X7K|1|a|C|1053
*
6X7K|1|a|G|1106
6X7K|1|a|G|1107
6X7K|1|a|U|1108
6X7K|1|a|C|1109
6X7K|1|a|G|1110
6X7K|1|a|A|1111
6X7K|1|a|G|1112

Current chains

Chain a
23S rRNA

Nearby chains

Chain 9
50S ribosomal protein L10
Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.148 s