IL_6X9Q_004
3D structure
- PDB id
- 6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CAU*AG
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6X9Q_004 not in the Motif Atlas
- Homologous match to IL_4LFB_004
- Geometric discrepancy: 0.102
- The information below is about IL_4LFB_004
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_80097.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6X9Q|1|D|C|54
6X9Q|1|D|A|55
6X9Q|1|D|U|56
*
6X9Q|1|D|A|356
6X9Q|1|D|G|357
Current chains
- Chain D
- 16S rRNA
Nearby chains
No other chains within 10ÅColoring options: