IL_6X9Q_014
3D structure
- PDB id
- 6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 6X9Q|1|D|U|244, 6X9Q|1|D|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6X9Q_014 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.0756
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6X9Q|1|D|G|242
6X9Q|1|D|A|243
6X9Q|1|D|U|244
6X9Q|1|D|U|245
6X9Q|1|D|A|246
6X9Q|1|D|G|247
*
6X9Q|1|D|C|277
6X9Q|1|D|G|278
6X9Q|1|D|A|279
6X9Q|1|D|C|280
6X9Q|1|D|G|281
6X9Q|1|D|A|282
6X9Q|1|D|U|283
6X9Q|1|D|C|284
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain R
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
Coloring options: