3D structure

PDB id
6X9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 27 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6X9Q|1|a|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6X9Q_107 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.166
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6X9Q|1|a|C|1043
6X9Q|1|a|C|1044
6X9Q|1|a|C|1045
6X9Q|1|a|A|1046
6X9Q|1|a|G|1047
6X9Q|1|a|A|1048
6X9Q|1|a|C|1049
6X9Q|1|a|A|1050
6X9Q|1|a|G|1051
*
6X9Q|1|a|U|1108
6X9Q|1|a|C|1109
6X9Q|1|a|G|1110
6X9Q|1|a|A|1111
6X9Q|1|a|G|1112

Current chains

Chain a
23S rRNA

Nearby chains

Chain 9
50S ribosomal protein L10
Chain p
50S ribosomal protein L6
Chain q
50S ribosomal protein L36

Coloring options:


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