IL_6XA1_016
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6XA1|1|L5|G|400, 6XA1|1|L5|G|404
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_016 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1298
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6XA1|1|L5|G|378
6XA1|1|L5|A|379
6XA1|1|L5|A|380
6XA1|1|L5|C|381
*
6XA1|1|L5|G|392
6XA1|1|L5|A|393
6XA1|1|L5|G|394
6XA1|1|L5|U|395
6XA1|1|L5|U|396
6XA1|1|L5|C|397
6XA1|1|L5|A|398
6XA1|1|L5|A|399
6XA1|1|L5|G|400
6XA1|1|L5|A|401
6XA1|1|L5|G|402
6XA1|1|L5|G|403
6XA1|1|L5|G|404
6XA1|1|L5|C|405
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: