IL_6XA1_043

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6XA1|1|L5|C|1365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_043 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.249

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6XA1|1|L5|G|1347
6XA1|1|L5|G|1348
*
6XA1|1|L5|C|1363
6XA1|1|L5|G|1364
6XA1|1|L5|C|1365
6XA1|1|L5|C|1366

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15