IL_6XA1_045

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_045 not in the Motif Atlas

Geometric match to IL_4XWF_001

Geometric discrepancy: 0.1464

The information below is about IL_4XWF_001

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6XA1|1|L5|C|1418
6XA1|1|L5|G|1419
6XA1|1|L5|A|1420
6XA1|1|L5|G|1421
*
6XA1|1|L5|C|1437
6XA1|1|L5|G|1438
6XA1|1|L5|A|1439
6XA1|1|L5|G|1440

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18