IL_6XA1_049

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

6XA1|1|L5|A|1637, 6XA1|1|L5|G|1641

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|C|1507
6XA1|1|L5|C|1508
6XA1|1|L5|OMG|1509
6XA1|1|L5|A|1510
6XA1|1|L5|A2M|1511
6XA1|1|L5|A|1512
6XA1|1|L5|G|1513
*
6XA1|1|L5|C|1635
6XA1|1|L5|U|1636
6XA1|1|L5|A|1637
6XA1|1|L5|G|1638
6XA1|1|L5|U|1639
6XA1|1|L5|A|1640
6XA1|1|L5|G|1641
6XA1|1|L5|C|1642
6XA1|1|L5|U|1643
6XA1|1|L5|G|1644

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain La

60S ribosomal protein L27a

Chain Lj

60S ribosomal protein L37