IL_6XA1_053

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_053 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0824

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6XA1|1|L5|G|1573
6XA1|1|L5|G|1574
6XA1|1|L5|U|1575
6XA1|1|L5|C|1576
*
6XA1|1|L5|G|1592
6XA1|1|L5|U|1593
6XA1|1|L5|C|1594

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lj

60S ribosomal protein L37