IL_6XA1_110

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*C(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_110 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1716

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6XA1|1|L5|G|3734
6XA1|1|L5|A|3735
6XA1|1|L5|G|3736
*
6XA1|1|L5|C|3746
6XA1|1|L5|PSU|3747
6XA1|1|L5|C|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain j

Eukaryotic peptide chain release factor subunit 1