IL_6XA1_115

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6XA1|1|L5|A|3880, 6XA1|1|L5|C|4530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_115 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0945

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6XA1|1|L5|G|3879
6XA1|1|L5|A|3880
6XA1|1|L5|A|3881
*
6XA1|1|L5|U|4528
6XA1|1|L5|A|4529
6XA1|1|L5|C|4530
6XA1|1|L5|C|4531

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17