IL_6XA1_117

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

6XA1|1|L5|A|4355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_117 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0831

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6XA1|1|L5|G|3895
6XA1|1|L5|A|3896
*
6XA1|1|L5|U|4354
6XA1|1|L5|A|4355
6XA1|1|L5|C|4356
6XA1|1|L5|C|4357

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain NC

Stalled Nascent chain