IL_6XA1_119

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6XA1|1|L5|G|4153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_119 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.097

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

6XA1|1|L5|U|3906
6XA1|1|L5|A|3907
6XA1|1|L5|G|3908
*
6XA1|1|L5|U|4151
6XA1|1|L5|G|4152
6XA1|1|L5|G|4153
6XA1|1|L5|G|4154

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lo

60S ribosomal protein L36a