IL_6XA1_121

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGGGCGAGCUCUCGCUUCUGGCGCCAAG*CGAC

Length

33 nucleotides

Bulged bases

6XA1|1|L5|G|4092, 6XA1|1|L5|C|4093, 6XA1|1|L5|U|4094, 6XA1|1|L5|U|4095, 6XA1|1|L5|G|4098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|G|4069
6XA1|1|L5|G|4070
6XA1|1|L5|G|4071
6XA1|1|L5|G|4072
6XA1|1|L5|G|4073
6XA1|1|L5|C|4074
6XA1|1|L5|G|4075
6XA1|1|L5|A|4076
6XA1|1|L5|G|4086
6XA1|1|L5|C|4087
6XA1|1|L5|U|4088
6XA1|1|L5|C|4089
6XA1|1|L5|U|4090
6XA1|1|L5|C|4091
6XA1|1|L5|G|4092
6XA1|1|L5|C|4093
6XA1|1|L5|U|4094
6XA1|1|L5|U|4095
6XA1|1|L5|C|4096
6XA1|1|L5|U|4097
6XA1|1|L5|G|4098
6XA1|1|L5|G|4099
6XA1|1|L5|C|4100
6XA1|1|L5|G|4101
6XA1|1|L5|C|4102
6XA1|1|L5|C|4103
6XA1|1|L5|A|4104
6XA1|1|L5|A|4105
6XA1|1|L5|G|4106
*
6XA1|1|L5|C|4125
6XA1|1|L5|G|4126
6XA1|1|L5|A|4127
6XA1|1|L5|C|4128

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LX

60S ribosomal protein L23a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a