IL_6XA1_122

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6XA1|1|L5|A|4173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_122 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.1258

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6XA1|1|L5|G|4161
6XA1|1|L5|A|4162
*
6XA1|1|L5|U|4172
6XA1|1|L5|A|4173
6XA1|1|L5|C|4174

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a