IL_6XA1_124

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

6XA1|1|L5|A|4262

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_124 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1852

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6XA1|1|L5|G|4261
6XA1|1|L5|A|4262
6XA1|1|L5|PSU|4263
6XA1|1|L5|C|4264
*
6XA1|1|L5|G|4286
6XA1|1|L5|A|4287
6XA1|1|L5|C|4288

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a