IL_6XA1_130

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_130 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1235

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XA1|1|L5|C|4382
6XA1|1|L5|C|4383
6XA1|1|L5|A|4384
6XA1|1|L5|A|4385
6XA1|1|L5|G|4386
*
6XA1|1|L5|C|4396
6XA1|1|L5|G|4397
6XA1|1|L5|A|4398
6XA1|1|L5|C|4399
6XA1|1|L5|G|4400

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

60S ribosomal protein L40

Chain j

Eukaryotic peptide chain release factor subunit 1