IL_6XA1_139

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_139 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2945

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6XA1|1|L5|A|4505
6XA1|1|L5|OMC|4506
6XA1|1|L5|C|4507
*
6XA1|1|L5|G|4519
6XA1|1|L5|G|4520
6XA1|1|L5|U|4521

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Bv

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain j

Eukaryotic peptide chain release factor subunit 1