IL_6XA1_141

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)U*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_141 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.2931

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6XA1|1|L5|G|4545
6XA1|1|L5|PSU|4546
6XA1|1|L5|U|4547
*
6XA1|1|L5|G|4696
6XA1|1|L5|A|4697
6XA1|1|L5|U|4698

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3