IL_6XA1_154

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

6XA1|1|L5|C|4726, 6XA1|1|L5|U|4727, 6XA1|1|L5|A|4733, 6XA1|1|L5|G|4835, 6XA1|1|L5|G|4838, 6XA1|1|L5|U|4841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|L5|C|4725
6XA1|1|L5|C|4726
6XA1|1|L5|U|4727
6XA1|1|L5|C|4728
6XA1|1|L5|G|4729
6XA1|1|L5|G|4730
6XA1|1|L5|A|4731
6XA1|1|L5|U|4732
6XA1|1|L5|A|4733
6XA1|1|L5|G|4734
*
6XA1|1|L5|U|4834
6XA1|1|L5|G|4835
6XA1|1|L5|C|4836
6XA1|1|L5|G|4837
6XA1|1|L5|G|4838
6XA1|1|L5|A|4839
6XA1|1|L5|G|4840
6XA1|1|L5|U|4841
6XA1|1|L5|G|4842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a