IL_6XA1_183

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|S2|U|115
6XA1|1|S2|OMU|116
6XA1|1|S2|C|117
6XA1|1|S2|C|118
6XA1|1|S2|PSU|119
6XA1|1|S2|U|120
6XA1|1|S2|OMU|121
6XA1|1|S2|G|122
*
6XA1|1|S2|C|342
6XA1|1|S2|A|343
6XA1|1|S2|U|344
6XA1|1|S2|U|345
6XA1|1|S2|C|346
6XA1|1|S2|G|347
6XA1|1|S2|A|348

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11