IL_6XA1_186

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGAUAAC*GCUAA(OMU)A(OMC)A

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XA1|1|S2|U|144
6XA1|1|S2|G|145
6XA1|1|S2|G|146
6XA1|1|S2|A|147
6XA1|1|S2|U|148
6XA1|1|S2|A|149
6XA1|1|S2|A|150
6XA1|1|S2|C|151
*
6XA1|1|S2|G|167
6XA1|1|S2|C|168
6XA1|1|S2|U|169
6XA1|1|S2|A|170
6XA1|1|S2|A|171
6XA1|1|S2|OMU|172
6XA1|1|S2|A|173
6XA1|1|S2|OMC|174
6XA1|1|S2|A|175

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24