IL_6XA1_200

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

6XA1|1|S2|G|588

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_200 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1731

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6XA1|1|S2|G|563
6XA1|1|S2|A|564
6XA1|1|S2|G|565
*
6XA1|1|S2|C|585
6XA1|1|S2|G|586
6XA1|1|S2|A|587
6XA1|1|S2|G|588
6XA1|1|S2|G|589
6XA1|1|S2|A2M|590
6XA1|1|S2|U|591
6XA1|1|S2|C|592

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30