IL_6XA1_230

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

6XA1|1|S2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_230 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2236

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6XA1|1|S2|C|1205
6XA1|1|S2|G|1206
6XA1|1|S2|G|1207
6XA1|1|S2|A|1208
*
6XA1|1|S2|U|1691
6XA1|1|S2|PSU|1692
6XA1|1|S2|G|1693

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26

Chain k

mRNA