IL_6XA1_251

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUC*GUAACC

Length

9 nucleotides

Bulged bases

6XA1|1|S2|A|1580, 6XA1|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_251 not in the Motif Atlas

Geometric match to IL_8B0X_054

Geometric discrepancy: 0.209

The information below is about IL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6XA1|1|S2|G|1550
6XA1|1|S2|U|1551
6XA1|1|S2|C|1558
*
6XA1|1|S2|G|1577
6XA1|1|S2|U|1578
6XA1|1|S2|A|1579
6XA1|1|S2|A|1580
6XA1|1|S2|C|1581
6XA1|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29