IL_6XA1_285
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- 6XA1|1|L5|G|3818
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_285 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0799
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
6XA1|1|L5|G|2834
6XA1|1|L5|G|2835
6XA1|1|L5|A|2836
6XA1|1|L5|A|2837
6XA1|1|L5|G|2838
6XA1|1|L5|U|2839
6XA1|1|L5|C|2840
6XA1|1|L5|G|2841
6XA1|1|L5|G|2842
*
6XA1|1|L5|C|3816
6XA1|1|L5|U|3817
6XA1|1|L5|G|3818
6XA1|1|L5|U|3819
6XA1|1|L5|OMC|3820
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
Coloring options: