IL_6XDQ_020
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAGAAG*UGUAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_020 not in the Motif Atlas
- Geometric match to IL_6CZR_359
- Geometric discrepancy: 0.2156
- The information below is about IL_6CZR_359
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28026.2
- Basepair signature
- cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6XDQ|1|D|U|409
6XDQ|1|D|G|410
6XDQ|1|D|A|411
6XDQ|1|D|A|412
6XDQ|1|D|G|413
6XDQ|1|D|A|414
6XDQ|1|D|A|415
6XDQ|1|D|G|416
*
6XDQ|1|D|U|427
6XDQ|1|D|G|428
6XDQ|1|D|U|429
6XDQ|1|D|A|430
6XDQ|1|D|A|431
6XDQ|1|D|A|432
6XDQ|1|D|G|433
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S4
Coloring options: