IL_6XDQ_082
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6XDQ|1|a|G|801, 6XDQ|1|a|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_082 not in the Motif Atlas
- Geometric match to IL_7RQB_018
- Geometric discrepancy: 0.0596
- The information below is about IL_7RQB_018
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.6
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XDQ|1|a|G|674
6XDQ|1|a|A|675
6XDQ|1|a|A|676
6XDQ|1|a|A|677
6XDQ|1|a|C|678
*
6XDQ|1|a|G|799
6XDQ|1|a|A|800
6XDQ|1|a|G|801
6XDQ|1|a|A|802
6XDQ|1|a|U|803
6XDQ|1|a|A|804
6XDQ|1|a|G|805
6XDQ|1|a|C|806
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L15
Coloring options: