IL_6XDQ_185
3D structure
- PDB id
- 6XDQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli coupled transcription-translation complex B3 (TTC-B3) containing an mRNA with a 30 nt long spacer, transcription factors NusA and NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XDQ_185 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0557
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6XDQ|1|d|C|71
6XDQ|1|d|G|72
6XDQ|1|d|A|73
6XDQ|1|d|U|74
6XDQ|1|d|G|75
6XDQ|1|d|G|76
6XDQ|1|d|U|77
6XDQ|1|d|A|78
6XDQ|1|d|G|79
*
6XDQ|1|d|C|97
6XDQ|1|d|G|98
6XDQ|1|d|A|99
6XDQ|1|d|G|100
6XDQ|1|d|A|101
6XDQ|1|d|G|102
6XDQ|1|d|U|103
6XDQ|1|d|A|104
6XDQ|1|d|G|105
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L30
- Chain v
- 50S ribosomal protein L16
Coloring options: