IL_6XDR_008

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGA*UUGC

Length

7 nucleotides

Bulged bases

6XDR|1|D|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_008 not in the Motif Atlas

Homologous match to IL_5J7L_008

Geometric discrepancy: 0.1901

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6XDR|1|D|G|75
6XDR|1|D|G|76
6XDR|1|D|A|77
*
6XDR|1|D|U|92
6XDR|1|D|U|93
6XDR|1|D|G|94
6XDR|1|D|C|95

Current chains

Chain D

16S rRNA

Nearby chains