IL_6XDR_020

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6XDR|1|D|U|409
6XDR|1|D|G|410
6XDR|1|D|A|411
6XDR|1|D|A|412
6XDR|1|D|G|413
6XDR|1|D|A|414
6XDR|1|D|A|415
6XDR|1|D|G|416
*
6XDR|1|D|U|427
6XDR|1|D|G|428
6XDR|1|D|U|429
6XDR|1|D|A|430
6XDR|1|D|A|431
6XDR|1|D|A|432
6XDR|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4