IL_6XDR_041

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6XDR|1|D|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0981

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6XDR|1|D|G|933
6XDR|1|D|C|934
6XDR|1|D|A|935
*
6XDR|1|D|U|1380
6XDR|1|D|U|1381
6XDR|1|D|C|1382
6XDR|1|D|C|1383
6XDR|1|D|C|1384

Current chains

Chain D

16S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9