IL_6XDR_052

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_052 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1132

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6XDR|1|D|G|1124
6XDR|1|D|U|1125
6XDR|1|D|U|1126
6XDR|1|D|G|1127
6XDR|1|D|C|1128
*
6XDR|1|D|G|1144
6XDR|1|D|A|1145
6XDR|1|D|A|1146
6XDR|1|D|C|1147
6XDR|1|D|U|1148
6XDR|1|D|C|1149

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9

Chain P

30S ribosomal protein S10