IL_6XDR_059

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6XDR|1|D|C|1400, 6XDR|1|D|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_059 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0566

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6XDR|1|D|C|1399
6XDR|1|D|C|1400
6XDR|1|D|G|1401
*
6XDR|1|D|C|1501
6XDR|1|D|A|1502
6XDR|1|D|A|1503
6XDR|1|D|G|1504

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 27 nt long spacer

Chain B

Transfer RNA; tRNA