3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GGGGUAG*CGAAUAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_093 not in the Motif Atlas
Homologous match to IL_5J7L_270
Geometric discrepancy: 0.0576
The information below is about IL_5J7L_270
Detailed Annotation
7x7 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_29198.2
Basepair signature
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6XDR|1|a|G|856
6XDR|1|a|G|857
6XDR|1|a|G|858
6XDR|1|a|G|859
6XDR|1|a|U|860
6XDR|1|a|A|861
6XDR|1|a|G|862
*
6XDR|1|a|C|915
6XDR|1|a|G|916
6XDR|1|a|A|917
6XDR|1|a|A|918
6XDR|1|a|U|919
6XDR|1|a|A|920
6XDR|1|a|C|921

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
50S ribosomal protein L27
Chain d
5S ribosomal RNA; 5S rRNA
Chain f
50S ribosomal protein L30
Chain v
50S ribosomal protein L16

Coloring options:


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