IL_6XDR_116

3D structure

PDB id

6XDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XDR_116 not in the Motif Atlas

Homologous match to IL_5J7L_292

Geometric discrepancy: 0.0535

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6XDR|1|a|C|1351
6XDR|1|a|U|1352
6XDR|1|a|A|1353
6XDR|1|a|A|1354
6XDR|1|a|G|1355
*
6XDR|1|a|C|1376
6XDR|1|a|G|1377
6XDR|1|a|A|1378
6XDR|1|a|U|1379
6XDR|1|a|G|1380

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34