3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
6XDR|1|a|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_122 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.0932
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

6XDR|1|a|G|1432
6XDR|1|a|A|1433
6XDR|1|a|A|1434
6XDR|1|a|G|1435
*
6XDR|1|a|C|1557
6XDR|1|a|C|1558
6XDR|1|a|U|1559
6XDR|1|a|G|1560
6XDR|1|a|C|1561

Current chains

Chain a
23S rRNA

Nearby chains

Chain h
50S ribosomal protein L2

Coloring options:


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