3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XDR_197 not in the Motif Atlas
Homologous match to IL_5J7L_386
Geometric discrepancy: 0.0458
The information below is about IL_5J7L_386
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22854.4
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
7

Unit IDs

6XDR|1|a|G|1666
6XDR|1|a|G|1667
6XDR|1|a|A|1668
6XDR|1|a|A|1669
6XDR|1|a|C|1670
6XDR|1|a|U|1671
6XDR|1|a|A|1672
6XDR|1|a|G|1673
6XDR|1|a|G|1674
*
6XDR|1|a|C|1990
6XDR|1|a|U|1991
6XDR|1|a|G|1992
6XDR|1|a|U|1993
6XDR|1|a|C|1994

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain t
50S ribosomal protein L14

Coloring options:


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